Semantic Web features in Bioclipse 2.2

Ola is releasing Bioclipse 2.2.0 today, and asked me to show case the semantic web functionality in Bioclipse. I realized that I do not have a nice page showing the semantic web overview. But I did blog a lot about RDF functionality, so here’s a list of pointers:

1 minute read

Semantic Chemistry with the Resource Description Framework

First Call for Papers
Semantic Chemistry with the Resource Description Framework
240th ACS National Meeting & Exposition
Boston, Massachusetts, August 22-26, 2010
CINF Division

1 minute read

Extracting RDF from Chem4Word documents

Joe has released the first Chem4Word demo file, and has written about how to extract the CML with Java and with C#.

less than 1 minute read

Installation HOWTO for CDK-Taverna 0.5.1.1 in Taverna 1.7.2

Thomas made a new release of CDK-Taverna for the Taverna 1.7.2 release, which is great news as the previous release was for Taverna 1.7.1.

2 minute read

Warren DeLano and the future of PyMOL

This blog is old and new news. The old news is that Warren passed away at the end of last year, after having successfully shown how OpenSource cheminformatics (and/or bioinformatics) software can be developed in a commercial setting (DeLano Scientific), and PyMol was a huge success. Warren had a SourceForge account (wdelano) for almost 10 years:

2 minute read

Very cold in Uppsala!

 

less than 1 minute read

BlueObelisk StackExchange: summary of the first month

The Blue Obelisk StackExchange (BO_x) has seen a relatively good start, but the number of questions is dropping. The average number of unique visits is about 23-30 now:

less than 1 minute read