cdkbook

AromaticBonds.groovy

Source code:

@Grab(group='org.openscience.cdk', module='cdk-bundle', version='2.8')

import org.openscience.cdk.interfaces.*;
import org.openscience.cdk.smiles.*;
import org.openscience.cdk.templates.*;
import org.openscience.cdk.aromaticity.*;
import org.openscience.cdk.graph.*;
import org.openscience.cdk.silent.*;

sp = new SmilesParser(
  SilentChemObjectBuilder.getInstance()
)
mol = sp.parseSmiles("c1ccccc1")
model       = ElectronDonation.daylight();
cycles      = Cycles.or(Cycles.all(), Cycles.all(6));
aromaticity = new Aromaticity(model, cycles);

aromaticBonds = aromaticity.findBonds(mol)
count = aromaticBonds.size()
println "benzene has " + count + " aromatic bonds."

Output:

benzene has 6 aromatic bonds.