lipidmaps-wp-curation

WikiPathways WP3933

• WikiPathways: WP3933 (classic)
• Species: Homo sapiens
• Scholia: WP3933
• WPRDF file: wp/Human/WP3933.ttl
• GPMLRDF file: wp/gpml/Human/WP3933.ttl
• SBML file: sbml/WP3933.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 20
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 110
• Number of assertions: 222
• Number of fails: 1

Fails

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 20

http://classic.wikipathways.org/instance/WP3933_r127616 ATP has 1927-31-7 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 CTP has 2056-98-6 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 ADP has 58-64-0 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 SAM has C00019 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 SAH has C00021 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 L-Serine has C00065 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 Choline has C00114 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 Ethanolamine has C00189 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 CDP-choline has C00307 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 O-Phosphoethanolamine has C00346 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 Phosphatidylethanolamine has C00350 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 CDP-Ethanolamine has C00570 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 Phosphatidylserine has C02737 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 CMP has CHEBI:17361 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 DAG has CHEBI:18035 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 Phosphocholine has CHEBI:18132 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 Sphingolipid has CHEBI:26739 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 AAG has CHEBI:73341 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 PPi has Q290828 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3933_r127616 Phosphatidylcholines has Q650187 from Wikidata but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS