lipidmaps-wp-curation

WikiPathways WP3965

• WikiPathways: WP3965
• Scholia: WP3965
• WPRDF file: wp/Human/WP3965.ttl
• GPMLRDF file: wp/gpml/Human/WP3965.ttl
• SBML file: sbml/WP3965.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 3
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 14
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 109
• Number of assertions: 220
• Number of fails: 2

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 3

http://classic.wikipathways.org/instance/WP3965_r117154 http://rdf.wikipathways.org/Pathway/WP3965_r117154/DataNode/d9c4f (Fatty acid
elongation)
http://classic.wikipathways.org/instance/WP3965_r117154 http://rdf.wikipathways.org/Pathway/WP3965_r117154/DataNode/ca92d (Glycerolipid
metabolism)
http://classic.wikipathways.org/instance/WP3965_r117154 http://rdf.wikipathways.org/Pathway/WP3965_r117154/DataNode/f355b (Glycerophospholipid
metabolism)

LIPIDMAPSTests.onlyLIPIDMAPS

Expected a LIPID MAPS identifier, but found other identifiers: 14

http://classic.wikipathways.org/instance/WP3965_r117154 Acetyl-CoA(cyt) has CHEBI:15351 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 Acetyl-CoA(mit) has CHEBI:15351 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 Pyruvate has CHEBI:15361 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 Palimitate-CoA has CHEBI:15525 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 Malonyl-CoA has CHEBI:15531 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 Palimitate has CHEBI:15756 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 MAG has CHEBI:17408 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 TAG has CHEBI:17855 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 DAG has CHEBI:18035 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 BCAA has CHEBI:22918 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 Acetate has CHEBI:30089 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 Free fatty acids has CHEBI:35366 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 Citrate has CHEBI:35804 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r117154 BCFA has CHEBI:35819 from ChEBI but expected a LIPID MAPS identifier

More details at https://wikipathways.github.io/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS