lipidmaps-wp-curation
WikiPathways WP3965
- WikiPathways: WP3965 (classic)
- Species: Homo sapiens
- Scholia: WP3965
- WPRDF file: wp/Human/WP3965.ttl
- GPMLRDF file: wp/gpml/Human/WP3965.ttl
- SBML file: sbml/WP3965.sbml (SVG) (conversion notes)
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests: all 5 tests OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 13 tests OK!
- HMDBMetabolitesTests: all 1 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests: all 8 tests OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests
- retiredIdentifiers: .. all OK!
- onlyLIPIDMAPS: .x we found 1 problem(s):
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 7 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests
- casWithoutMapping: .. all OK!
- chebiWithoutMapping: .x we found 1 problem(s):
- chebiWithoutMapping_Reactome: .. all OK!
- chemspiderCIDWithoutMapping: .. all OK!
- duplicateWikidataMappings: .. all OK!
- hmdbWithoutMapping: .. all OK!
- kNApSAcKWithoutMapping: .. all OK!
- keggWithoutMapping: .. all OK!
- lipidMapsWithoutMapping: .. all OK!
- pubchemCIDWithoutMapping: .. all OK!
- replaceWikipedia: .. all OK!
- retiredIdentifiers: .. all OK!
- wikDataTypo: .. all OK!
- wikidataIdentifiersWrong: .. all OK!
Summary
- Number of test classes: 21
- Number of tests: 110
- Number of assertions: 222
- Number of fails: 2
Fails
Only LIPID MAPS identifiers
Expected a LIPID MAPS identifier, but found other identifiers: 14
http://classic.wikipathways.org/instance/WP3965_r128420 Acetyl-CoA (cyt) has CHEBI:15351 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 Acetyl-CoA (mit) has CHEBI:15351 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 Pyruvate has CHEBI:15361 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 Palimitate-CoA has CHEBI:15525 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 Malonyl-CoA has CHEBI:15531 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 Palimitate has CHEBI:15756 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 MAG has CHEBI:17408 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 TAG has CHEBI:17855 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 DAG has CHEBI:18035 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 BCAA has CHEBI:22918 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 Acetate has CHEBI:30089 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 Free fatty acids has CHEBI:35366 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 Citrate has CHEBI:35804 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP3965_r128420 BCFA has CHEBI:35819 from ChEBI but expected a LIPID MAPS identifier
More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS
ChEBI identifier without a match in Wikidata
ChEBI identifiers without Wikidata mappings: 1
https://identifiers.org/chebi/CHEBI:35804 (Citrate) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP3965_r128420 ;
More details at https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping