lipidmaps-wp-curation

WikiPathways WP4189

• WikiPathways: WP4189
• Scholia: WP4189
• WPRDF file: wp/Human/WP4189.ttl
• GPMLRDF file: wp/gpml/Human/WP4189.ttl
• SBML file: sbml/WP4189.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 53
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 109
• Number of assertions: 220
• Number of fails: 2

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 2

http://classic.wikipathways.org/instance/WP4189_r124610 http://rdf.wikipathways.org/Pathway/WP4189_r124610/DataNode/dfef9 (mevaldyl-CoA)
http://classic.wikipathways.org/instance/WP4189_r124610 http://rdf.wikipathways.org/Pathway/WP4189_r124610/DataNode/c8400 (protein prenylation)

LIPIDMAPSTests.onlyLIPIDMAPS

Expected a LIPID MAPS identifier, but found other identifiers: 53

http://classic.wikipathways.org/instance/WP4189_r124610 P'-geranyl 3,5,9-trihydroxy-3- methylnonanate 9-diphosphate has 11650985 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 NE58018 has 405372 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 (1-Methyl-1-{[3-(3-phenoxyphenyl)propyl] carbamoyl}ethyl)phosphonate has 44185378 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 Compound 13 has 44185378 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 [1-(Hydroxycarbamoyl)-4- (3-phenoxyphenyl)butyl]phosphonate has 44185382 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 L-659699 has 6440895 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 Acetyl-CoA has CHEBI:15351 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 (+)-Zaragozic acid has CHEBI:83934 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 CHEMBL1160328 has CHEMBL1160328 from ChEMBL compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 CHEMBL1160330 has CHEMBL1160330 from ChEMBL compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 CHEMBL1207858 has CHEMBL1207858 from ChEMBL compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 CHEMBL1208103 has CHEMBL1208103 from ChEMBL compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 CHEMBL24362 has CHEMBL24362 from ChEMBL compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 CHEMBL39102 has CHEMBL39102 from ChEMBL compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 CHEMBL39312 has CHEMBL39312 from ChEMBL compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 Cinnamic acid has HMDB0000567 from HMDB but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 Risedronate has HMDB0015022 from HMDB but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 acetoacetyl-CoA has Q2639429 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 famesyl-PP has Q2699676 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 2-fluoromevalonate 5-diphosphate has Q27071897 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 3-hydroxy-3-methyl-6-phosphohexanoic acid has Q27073729 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 6-fluoromevalonate 5-diphosphate has Q27074009 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 BPH-608 has Q27075443 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 BPH-628 has Q27075447 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 BPH-629 has Q27075449 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 BPH-675 has Q27075451 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 BPH-676 has Q27075453 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 BPH-830 has Q27075459 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 diphosphoglycolyl proline has Q27077077 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 farnesyl thiodiphosphate has Q27077283 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 NE58062 has Q27087889 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 NE97220 has Q27087890 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 P'-geranyl 2-fluoromevalonate 5-diphosphate has Q27088347 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 presqualene-PP has Q27088444 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 isoferulic acid has Q27096447 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 3-hydroxy-3-methylglutaryl-CoA has Q27108899 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 mevalonate has Q27109878 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 mevalonate-P has Q27464491 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 zoledronic acid has Q28852343 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 squalene has Q407560 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 rosuvastatin has Q415159 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 dimethylallyl-PP has Q417398 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 isopenthyl-PP has Q417403 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 lovastatin has Q417740 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 Fluvastatin has Q417942 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 geranyl-PP has Q418125 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 cerivastatin has Q423439 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 mevalonate-PP has Q45415198 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 atorvastatin has Q668093 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 simvastatin has Q670131 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 sq-109 has Q7392720 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 geranylgeranyl-PP has Q774795 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4189_r124610 p-coumaric acid has Q99374 from Wikidata but expected a LIPID MAPS identifier

More details at https://wikipathways.github.io/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS