lipidmaps-wp-curation

WikiPathways WP4190

• WikiPathways: WP4190
• Scholia: WP4190
• WPRDF file: wp/Human/WP4190.ttl
• GPMLRDF file: wp/gpml/Human/WP4190.ttl
• SBML file: sbml/WP4190.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 26
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 109
• Number of assertions: 220
• Number of fails: 2

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 1

http://classic.wikipathways.org/instance/WP4190_r124024 http://rdf.wikipathways.org/Pathway/WP4190_r124024/DataNode/c8400 (protein prenylation)

LIPIDMAPSTests.onlyLIPIDMAPS

Expected a LIPID MAPS identifier, but found other identifiers: 26

http://classic.wikipathways.org/instance/WP4190_r124024 isopenthyl-PP has 128769 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 acetoacetate has 13705 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 H+ has 15378 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 famesyl-PP has 175763 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 acetoacetyl-CoA has 57286 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 HS-CoA has 57287 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 Acetyl-CoA has 57288 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 presqualene-PP has 57310 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 NAD+ has 57540 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 dimethylallyl-PP has 57623 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 NADH has 57945 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 geranyl-PP has 58057 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 mevalonate-P has 58146 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 geranylgeranyl-PP has 58756 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 NAD(P)H has CHEBI:16474 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 NAD(P)+ has CHEBI:18009 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 mevalonate has CHEBI:36464 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 3-hydroxy-3-methylglutaryl-CoA has CHEBI:43074 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 Acetyl-CoA has CHEBI:57288 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 mevalonate-PP has CHEBI:57557 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 NAD(P)H has CHEBI:57783 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 NAD(P)+ has CHEBI:58349 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 mevaldyl has Q113961354 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 acetoacetyl-CoA has Q2639429 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 squalene has Q407560 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4190_r124024 mevaldyl-CoA has RGCJQGNQJYHPPZ-FMMSQWOCSA-I from InChIKey but expected a LIPID MAPS identifier

More details at https://wikipathways.github.io/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS