lipidmaps-wp-curation
WikiPathways WP4522
- WikiPathways: WP4522 (classic)
- Species: Homo sapiens
- Scholia: WP4522
- WPRDF file: wp/Human/WP4522.ttl
- GPMLRDF file: wp/gpml/Human/WP4522.ttl
- SBML file: sbml/WP4522.sbml (SVG) (conversion notes)
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests: all 5 tests OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 13 tests OK!
- HMDBMetabolitesTests: all 1 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests: all 8 tests OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests
- retiredIdentifiers: .. all OK!
- onlyLIPIDMAPS: .x we found 1 problem(s):
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 7 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 14 tests OK!
Summary
- Number of test classes: 21
- Number of tests: 110
- Number of assertions: 222
- Number of fails: 1
Fails
Only LIPID MAPS identifiers
Expected a LIPID MAPS identifier, but found other identifiers: 5
http://classic.wikipathways.org/instance/WP4522_r128956 IDL has CHEBI:132933 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4522_r128956 Cholesterol has CHEBI:16113 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4522_r128956 LDL has CHEBI:39026 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4522_r128956 VLDL has CHEBI:39027 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4522_r128956 Cyclic fatty acids has CHEBI:59238 from ChEBI but expected a LIPID MAPS identifier
More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS