lipidmaps-wp-curation

WikiPathways WP4722

• WikiPathways: WP4722 (classic)
• Species: Homo sapiens
• Scholia: WP4722
• WPRDF file: wp/Human/WP4722.ttl
• GPMLRDF file: wp/gpml/Human/WP4722.ttl
• SBML file: sbml/WP4722.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 11
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 110
• Number of assertions: 222
• Number of fails: 1

Fails

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 11

http://classic.wikipathways.org/instance/WP4722_r124748 Etn-P has 1015 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 CDP-Etn has 123727 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 Choline-P has 135437 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 CDP-Choline has 13804 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 CoA(20:0) has 15895-27-9 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 CoA(16:0) has 1763-10-6 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 Choline has 305 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 CoA(18:0) has 362-66-3 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 Glycerol-3-P has 439162 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 Etn has 700 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4722_r124748 CoA has CHEBI:15346 from ChEBI but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS