lipidmaps-wp-curation

WikiPathways WP4725

• WikiPathways: WP4725
• Scholia: WP4725
• WPRDF file: wp/Human/WP4725.ttl
• GPMLRDF file: wp/gpml/Human/WP4725.ttl
• SBML file: sbml/WP4725.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 10
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 109
• Number of assertions: 220
• Number of fails: 2

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 4

http://classic.wikipathways.org/instance/WP4725_r126692 http://rdf.wikipathways.org/Pathway/WP4725_r126692/DataNode/b12b3 (CoA(26:1))
http://classic.wikipathways.org/instance/WP4725_r126692 http://rdf.wikipathways.org/Pathway/WP4725_r126692/DataNode/b6b95 (CoA(26:1))
http://classic.wikipathways.org/instance/WP4725_r126692 http://rdf.wikipathways.org/Pathway/WP4725_r126692/DataNode/a9de8 (Ppap2a)
http://classic.wikipathways.org/instance/WP4725_r126692 http://rdf.wikipathways.org/Pathway/WP4725_r126692/DataNode/c0dd9 (Ppap2c)

LIPIDMAPSTests.onlyLIPIDMAPS

Expected a LIPID MAPS identifier, but found other identifiers: 10

http://classic.wikipathways.org/instance/WP4725_r126692 Ethanolamine-phosphate has 1015 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_r126692 CoA(24:0) has 24305-30-4 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_r126692 CoA(22:0) has 24330-89-0 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_r126692 Serine has 5951 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_r126692 CoA(24:1) has 88362-35-0 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_r126692 CoA(26:0) has 99313-57-2 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_r126692 H2O has CHEBI:15377 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_r126692 CoA(20:0) has CHEBI:15527 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_r126692 CoA(18:0) has CHEBI:15541 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_r126692 ADP has CHEBI:456216 from ChEBI but expected a LIPID MAPS identifier

More details at https://wikipathways.github.io/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS