lipidmaps-wp-curation

WikiPathways WP4971

• WikiPathways: WP4971 (classic)
• Species: Homo sapiens
• Scholia: WP4971
• WPRDF file: wp/Human/WP4971.ttl
• GPMLRDF file: wp/gpml/Human/WP4971.ttl
• SBML file: sbml/WP4971.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 14
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 110
• Number of assertions: 222
• Number of fails: 1

Fails

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 14

http://classic.wikipathways.org/instance/WP4971_r134602 H2O has CHEBI:15377 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 H+ has CHEBI:15378 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 DAG has CHEBI:17815 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 Ins(1,4,5)P3 has CHEBI:203600 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 Phosphate has CHEBI:43474 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 ADP has CHEBI:456216 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 PtdIns(3,4)P2 has CHEBI:57658 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 PtdIns(5)P has CHEBI:57795 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 PtdIns(3,4,5)P3 has CHEBI:57836 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 PtdIns has CHEBI:57880 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 PtdIns(3,5)P2 has CHEBI:57923 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 PtdIns(3)P has CHEBI:58088 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 PtdIns(4)P has CHEBI:58178 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4971_r134602 PtdIns(4,5)P2 has CHEBI:58456 from ChEBI but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS