lipidmaps-wp-curation

WikiPathways WP5037

• WikiPathways: WP5037 (classic)
• Species: Homo sapiens
• Scholia: WP5037
• WPRDF file: wp/Human/WP5037.ttl
• GPMLRDF file: wp/gpml/Human/WP5037.ttl
• SBML file: sbml/WP5037.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 29
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 110
• Number of assertions: 222
• Number of fails: 1

Fails

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 29

http://classic.wikipathways.org/instance/WP5037_r128507 6 IPP has CHEBI:128769 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 7 IPP has CHEBI:128769 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 AMP has CHEBI:16027 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 FAD has CHEBI:16238 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 a ubiquinone has CHEBI:16389 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 RIB has CHEBI:17015 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 Farnesyl-PP has CHEBI:175763 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 FMN has CHEBI:17621 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 a ubiquinol has CHEBI:17976 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 Fe2+ has CHEBI:29033 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 PPi has CHEBI:29888 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 PHB has CHEBI:30763 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 6 PP has CHEBI:33019 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 7 PP has CHEBI:33019 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 CoQ10 has CHEBI:46245 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 DMPhOH has CHEBI:50774 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 DHDB has CHEBI:50775 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 MHDB has CHEBI:50776 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 FAD has CHEBI:57692 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 FMN has CHEBI:58210 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 FADH2 has CHEBI:58307 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 Trans-nona prenyl-PP has CHEBI:58391 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 trans-deca prenyl-PP has CHEBI:60721 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 all-E-10PrP2 has CHEBI:61011 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 DHB has CHEBI:64136 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 MDMQ10H2 has CHEBI:64180 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 DMQ10H2 has CHEBI:64181 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 DeMQ10H2 has CHEBI:64182 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5037_r128507 Q10H2 has CHEBI:64183 from ChEBI but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS