lipidmaps-wp-curation

WikiPathways WP5274

• WikiPathways: WP5274 (classic)
• Species: Homo sapiens
• Scholia: WP5274
• WPRDF file: wp/Human/WP5274.ttl
• GPMLRDF file: wp/gpml/Human/WP5274.ttl
• SBML file: sbml/WP5274.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 9
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 110
• Number of assertions: 222
• Number of fails: 1

Fails

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 9

http://classic.wikipathways.org/instance/WP5274_r134508 4OH-benzoate has 135 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5274_r134508 Farnesyl-PP has 175763 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5274_r134508 Decarprenyl-PP has 46173330 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5274_r134508 4OH-Cinnamate has 637542 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5274_r134508 Decaprenyl-4OH-benzoate has 6454686 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5274_r134508 4OH-phenylpyruvate has CHEBI:15999 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5274_r134508 Tyrosine has CHEBI:18186 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5274_r134508 CoQ10 has CHEBI:46245 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5274_r134508 4OH-phenyllactate has HMDB0000755 from HMDB but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS