lipidmaps-wp-curation

WikiPathways WP5411

• WikiPathways: WP5411
• Scholia: WP5411
• WPRDF file: wp/Human/WP5411.ttl
• GPMLRDF file: wp/gpml/Human/WP5411.ttl
• SBML file: sbml/WP5411.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 2 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests
  • casWithoutMapping: .. all OK!
  • chebiWithoutMapping: .. all OK!
  • chebiWithoutMapping_Reactome: .. all OK!
  • chemspiderCIDWithoutMapping: .. all OK!
  • duplicateWikidataMappings: .. all OK!
  • hmdbWithoutMapping: .. all OK!
  • kNApSAcKWithoutMapping: .. all OK!
  • keggWithoutMapping: .. all OK!
  • lipidMapsWithoutMapping: .x we found 1 problem(s):
    • LIPID MAPS identifiers without Wikidata mappings: 7
  • pubchemCIDWithoutMapping: .. all OK!
  • replaceWikipedia: .. all OK!
  • retiredIdentifiers: .. all OK!
  • wikDataTypo: .. all OK!
  • wikidataIdentifiersWrong: .. all OK!

Summary

• Number of test classes: 21
• Number of tests: 109
• Number of assertions: 220
• Number of fails: 2

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 1

http://classic.wikipathways.org/instance/WP5411_r127207 http://rdf.wikipathways.org/Pathway/WP5411_r127207/DataNode/b66c1 (More)

WikidataTests.lipidMapsWithoutMapping

LIPID MAPS identifiers without Wikidata mappings: 7

https://identifiers.org/lipidmaps/LMGP07010000 (PIP[3']) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5411_r127207 ; 
https://identifiers.org/lipidmaps/LMGP070100A0 (PIP[4']) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5411_r127207 ; 
https://identifiers.org/lipidmaps/LMGP070100B0 (PIP[5']) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5411_r127207 ; 
https://identifiers.org/lipidmaps/LMGP08010005 (PIP2[4',5']) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5411_r127207 ; 
https://identifiers.org/lipidmaps/LMGP08010006 (PIP2[3'4']) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5411_r127207 ; 
https://identifiers.org/lipidmaps/LMGP08010007 (PIP2[3',5']) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5411_r127207 ; 
https://identifiers.org/lipidmaps/LMGP09010000 (PIP3[3',4',5']) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5411_r127207 ;