SARS-CoV-2-Queries

virusProteinsAll.rq

Ejemplos de código: curl

SPARQL

SELECT ?virus ?virusLabel ?protein ?proteinLabel ?refseq ?uniprot WHERE {
  VALUES ?virus {
    wd:Q82069695 # SARS-CoV-2
    wd:Q16983360 # HKU1
    wd:Q16991954 # OC43
    wd:Q8351095  # NL63 
    wd:Q16983356 # 229E
    wd:Q4902157  # MERS-CoV
    wd:Q278567   # SARS-CoV
  }
  ?protein wdt:P703 ?virus ; wdt:P31 wd:Q8054 .
  OPTIONAL { ?protein wdt:P637 ?refseq }
  OPTIONAL { ?protein wdt:P352 ?uniprot }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "es,en". }
} ORDER BY ?virus

ejecutar o editar

Resultados

virus protein refseq uniprot
Human coronavirus 229E (edit) Non-structural protein 4a (edit) NP_073552.1 P19739
Human coronavirus 229E (edit) Non-structural protein 4b (edit) NP_073553.1 P19740
Human coronavirus 229E (edit) Spike glycoprotein (edit) NP_073551.1 P15423
Human coronavirus 229E (edit) Membrane protein (edit) NP_073555.1 P15422
Human coronavirus 229E (edit) Nucleoprotein (edit) NP_073556.1 P15130
Human coronavirus 229E (edit) Envelope small membrane protein (edit) NP_073554.1 P19741
Human coronavirus 229E (edit) Replicase polyprotein 1a (edit) NP_073550.1 P0C6U2
Human coronavirus 229E (edit) Replicase polyprotein 1ab (edit) NP_073549.1 P0C6X1
Human coronavirus HKU1 (edit) Hemagglutinin-esterase (edit) YP_173237.1 Q5MQD1
Human coronavirus HKU1 (edit) Membrane protein (edit) YP_173241.1 Q5MQC7
Human coronavirus HKU1 (edit) Protein I (edit) YP_173243.1 Q5MQC5
Human coronavirus HKU1 (edit) Spike glycoprotein (edit) E0YJ44
Human coronavirus HKU1 (edit) Non-structural protein 4 (edit) YP_173239.1 Q5MQC9
Human coronavirus HKU1 (edit) Spike glycoprotein (edit) YP_173238.1 Q5MQD0
Human coronavirus HKU1 (edit) Envelope small membrane protein (edit) YP_173240.1 Q5MQC8
Human coronavirus HKU1 (edit) Nucleoprotein (edit) YP_173242.1 Q5MQC6
Human coronavirus HKU1 (edit) Replicase polyprotein 1ab (edit) YP_173236.1 P0C6X2
Human coronavirus OC43 (edit) envelope protein (edit) YP_009555243.1
Human coronavirus OC43 (edit) ns2 (edit) YP_009555239.1
Human coronavirus OC43 (edit) ns12.9 (edit) YP_009555242.1
Human coronavirus OC43 (edit) nucleocapsid protein (edit) YP_009555245.1
Human coronavirus OC43 (edit) spike surface glycoprotein (edit) YP_009555241.1
Human coronavirus OC43 (edit) Orf1ab (edit) YP_009555238.1
Human coronavirus OC43 (edit) membrane protein (edit) YP_009555244.1
Human coronavirus OC43 (edit) hemagglutinin-esterase (edit) YP_009555240.1 P30215
SARS coronavirus (edit) Protein 3a [SARS-Cov] (edit) NP_828852.2 P59632
SARS coronavirus (edit) Replicase polyprotein 1a (edit) P0C6U8
MERS-CoV (edit) spike glycoprotein (edit) YP_009047204.1 K9N5Q8
MERS-CoV (edit) nucleoprotein (edit) YP_009047211.1 K9N4V7
MERS-CoV (edit) NS3 protein (edit) YP_009047205.1 K9N796
MERS-CoV (edit) NS4B protein (edit) YP_009047207.1 K9N643
MERS-CoV (edit) Envelope small membrane protein (edit) K9N5R3
MERS-CoV (edit) Replicase polyprotein 1ab (edit) K9N7C7
MERS-CoV (edit) Non-structural protein ORF5 (edit) K9N7D2
MERS-CoV (edit) Replicase polyprotein 1a (edit) K9N638
MERS-CoV (edit) Membrane protein (edit) K9N7A1
MERS-CoV (edit) nucleocapsid protein (edit) YP_009047211.1
MERS-CoV (edit) spike protein (edit) YP_009047204.1
SARS-CoV-2 (edit) Non-structural protein 10 [SARS CoV-2] (edit) YP_009725306 P0DTC1-PRO_0000449644
SARS-CoV-2 (edit) Non-structural protein 10 [SARS CoV-2] (edit) YP_009725306 P0DTD1-PRO_0000449628
SARS-CoV-2 (edit) non-structural protein 15 [SARS-CoV-2] (edit) YP_009725310 P0DTD1-PRO_0000449632
SARS-CoV-2 (edit) non-structural protein 16 [SARS-CoV-2] (edit) YP_009725311 P0DTD1-PRO_0000449633
SARS-CoV-2 (edit) Papain-like proteinase [SARS-CoV-2] (edit) YP_009725299.1 P0DTC1-PRO_0000449637
SARS-CoV-2 (edit) Papain-like proteinase [SARS-CoV-2] (edit) YP_009725299.1 P0DTD1-PRO_0000449621
SARS-CoV-2 (edit) non-structural protein 5 [SARS-CoV-2] (edit) YP_009725301 P0DTC1-PRO_0000449639
SARS-CoV-2 (edit) non-structural protein 5 [SARS-CoV-2] (edit) YP_009725301 P0DTD1-PRO_0000449623
SARS-CoV-2 (edit) nucleocapsid protein [SARS-CoV-2] (edit) YP_009724397.2 P0DTC9
SARS-CoV-2 (edit) spike glycoprotein [SARS-CoV-2] (edit) YP_009724390.1 P0DTC2
SARS-CoV-2 (edit) orf1ab polyprotein [SARS-Cov 2] (edit) YP_009724389.1 P0DTD1
SARS-CoV-2 (edit) Viroporin 3a [SARS-CoV-2] (edit) YP_009724391.1 P0DTC3
SARS-CoV-2 (edit) envelope protein [SARS-CoV-2] (edit) YP_009724392.1 P0DTC4
SARS-CoV-2 (edit) membrane protein [SARS-CoV-2] (edit) YP_009724393.1 P0DTC5
SARS-CoV-2 (edit) non-structural protein 6 [SARS-CoV-2] (edit) P0DTC1-PRO_0000449640
SARS-CoV-2 (edit) non-structural protein 6 [SARS-CoV-2] (edit) P0DTD1-PRO_0000449624
SARS-CoV-2 (edit) ORF1a polyprotein (edit) YP_009725295.1 P0DTC1
SARS-CoV-2 (edit) Protein 7a [SARS-CoV-2] (edit) YP_009724395.1 P0DTC7
SARS-CoV-2 (edit) Protein non-structural 7b [SARS-CoV-2] (edit) YP_009725318.1 P0DTD8
SARS-CoV-2 (edit) ORF8 protein [SARS-CoV-2] (edit) YP_009724396.1 P0DTC8
SARS-CoV-2 (edit) Non-structural protein 2 [SARS CoV-2] (edit) P0DTC1-PRO_0000449636
SARS-CoV-2 (edit) Non-structural protein 2 [SARS CoV-2] (edit) P0DTD1-PRO_0000449620
SARS-CoV-2 (edit) ORF6 protein [SARS-CoV-2] (edit) YP_009724394.1 P0DTC6
SARS-CoV-2 (edit) ORF10 protein [SARS-CoV-2] (edit) YP_009725255.1 A0A663DJA2
SARS-CoV-2 (edit) Protein ORF9b [SARS-CoV-2] (edit) P0DTD2
SARS-CoV-2 (edit) Non-structural protein 9 [SARS-CoV-2] (edit) P0DTC1-PRO_0000449643
SARS-CoV-2 (edit) Non-structural protein 9 [SARS-CoV-2] (edit) P0DTD1-PRO_0000449627
SARS-CoV-2 (edit) Host translation inhibitor nsp1 [SARS-CoV-2] (edit) P0DTC1-PRO_0000449635
SARS-CoV-2 (edit) Host translation inhibitor nsp1 [SARS-CoV-2] (edit) P0DTD1-PRO_0000449619
SARS-CoV-2 (edit) Non-structural protein 4 [SARS-CoV-2] (edit) P0DTC1-PRO_0000449638
SARS-CoV-2 (edit) Non-structural protein 4 [SARS-CoV-2] (edit) P0DTD1-PRO_0000449622
SARS-CoV-2 (edit) Non-structural protein 7 [SARS-CoV-2] (edit) P0DTC1-PRO_0000449641
SARS-CoV-2 (edit) Non-structural protein 7 [SARS-CoV-2] (edit) P0DTD1-PRO_0000449625
SARS-CoV-2 (edit) RNA-directed RNA polymerase [SARS-CoV-2] (edit) YP_009725307 P0DTD1-PRO_0000449629
SARS-CoV-2 (edit) Non-structural protein 14 [SARS-CoV-2] (edit) YP_009725309 P0DTD1-PRO_0000449631
SARS-CoV-2 (edit) Helicase [SARS-CoV-2] (edit) YP_009725308 P0DTD1-PRO_0000449630
SARS-CoV-2 (edit) Non-structural protein nsp8 [SARS-CoV-2] (edit) P0DTC1-PRO_0000449642
SARS-CoV-2 (edit) Non-structural protein nsp8 [SARS-CoV-2] (edit) P0DTD1-PRO_0000449626
SARS-CoV-2 (edit) putative protein ORF3c (edit) P0DTG1
SARS-CoV-2 (edit) Non-structural protein 11 [SARS CoV-2] (edit) YP_009725312 P0DTC1-PRO_0000449645
SARS-CoV-2 (edit) ORF3b protein [SARS-CoV-2] (edit) P0DTF1
SARS-CoV-2 (edit) ORF9c protein [SARS CoV-2] (edit) P0DTD3
SARS-CoV-2 (edit) S1 Subunit of Spike Protein (edit) P0DTC2-PRO_0000449647
SARS-CoV-2 (edit) S2 Subunit of Spike Protein (edit) P0DTC2-PRO_0000449648
SARS-CoV-2 (edit) S2' Subunit of Spike Protein (edit) P0DTC2-PRO_0000449649
Coronavirus Humana NL63 (edit) Spike glycoprotein [NL63] (edit) YP_003767.1 Q6Q1S2
Coronavirus Humana NL63 (edit) Non-structural protein 3 (edit) YP_003768.1 Q6Q1S1
Coronavirus Humana NL63 (edit) Envelope small membrane protein (edit) YP_003769.1 Q6Q1S0
Coronavirus Humana NL63 (edit) Nucleoprotein (edit) YP_003771.1 Q6Q1R8
Coronavirus Humana NL63 (edit) Membrane protein (edit) YP_003770.1 Q6Q1R9
Coronavirus Humana NL63 (edit) Replicase polyprotein 1ab (edit) YP_003766.2 P0C6X5

Ejemplos de código

curl

curl -s https://raw.githubusercontent.com/egonw/SARS-CoV-2-Queries/master/sparql/virusProteinsAll.rq | sed 's+<lang/>+es+' > virusProteinsAll.rq

curl -H "Accept: text/tab-separated-values" -G https://query.wikidata.org/bigdata/namespace/wdq/sparql --data-urlencode query@virusProteinsAll.rq

Esta consulta SPARQL está disponible en CCZero.

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