Wikidata Queries around the SARS-CoV-2 virus and pandemic

© 2020 Addshore, Daniel Mietchen, Egon Willighagen

Editor: Egon L. Willighagen

License: CC-BY-SA 4.0 International

This book is written in Markdown with additional instructions that are preprocessed. This project was started after this tweet by Maulik Kamdar and hopes to contribute to Wikidata:WikiProject COVID-19.

Wishes, comments, and pull requests can be send to this GitHub repository. If you like this effort, please star this GitHub repository!

While the book itself has the CC-BY-SA, all SPARQL queries in this book can be used under the CCZero license/waiver.


  1. Introduction
    1.1. Adding missing topic annotation
    1.2. Other annotation
    1.3. Modelling the content in Wikidata
  2. Viruses
    2.1. The seven coronaviruses that infect human
    2.1.1. Comparing viruses
    2.2. NCBI Taxonomy IDs
  3. COVID-19
    3.1. Symptoms
    3.2. Clinical trials
  4. The pandemic
    4.1. Virus transmission
    4.2. Progression
    4.3. Regional progression
    4.3.1. Progression in The Netherlands
    4.3.2. Progression in Italy
    4.4. Graphed Regional progression
    4.4.1. Cases
    4.4.2. Deaths
  5. Genomes, Genes, and Proteins
    5.1. Genomes
    5.2. SARS-CoV-2
    5.2.1. Genes
    5.2.2. Proteins
    5.3. All human corona viruses
  6. The Human
    6.1. Interacting genes and proteins
    6.2. Biological processes
  7. Towards a solution
    7.1. Antibodies
    7.2. Drug repurposing
  8. Literature
    8.1. about SARS-CoV-2
    8.1.1. about SARS-CoV-2 genes
    8.1.2. about SARS-CoV-2 proteins
    8.2. about coronaviruses
    8.2.1. about human coronaviruses


Authors and contributors