SARS-CoV-2-Queries

pathways.rq

Code examples: curl

SPARQL

SELECT ?virus ?virusLabel ?thing ?thingLabel ?pathway ?pathwayLabel WHERE {
  VALUES ?virus {
    wd:Q82069695 # SARS-CoV-2
    wd:Q16983360 # HKU1
    wd:Q16991954 # OC43
    wd:Q8351095  # NL63 
    wd:Q16983356 # 229E
    wd:Q4902157  # MERS-CoV
    wd:Q278567   # SARS-CoV
  }
  ?thing wdt:P703 ?virus .
  ?pathway wdt:P31 wd:Q4915012 ; wdt:P527 ?thing .
  SERVICE wikibase:label { bd:serviceParam wikibase:language "pt,en". }
} ORDER BY ASC(?virus) ASC(?thing) ASC(?pathway)

run or edit

Output

virus	thing	pathway
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF9c protein [SARS CoV-2] (edit)	Mitochondrial immune response to SARS-CoV-2 (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	S1 Subunit of Spike Protein (edit)	Mitochondrial immune response to SARS-CoV-2 (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	S1 Subunit of Spike Protein (edit)	SARS-CoV-2 innate immunity evasion and cell-specific immune response (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	S1 Subunit of Spike Protein (edit)	SARS-CoV-2 altering angiogenesis via NRP1 (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	S1 Subunit of Spike Protein (edit)	Soluble ACE2-mediated cell entry of SARS-CoV-2 (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	S2 Subunit of Spike Protein (edit)	Mitochondrial immune response to SARS-CoV-2 (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	S2 Subunit of Spike Protein (edit)	SARS-CoV-2 altering angiogenesis via NRP1 (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	S2 Subunit of Spike Protein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Non-structural protein 10 [SARS CoV-2] (edit)	A draft map of SARS-COV-2 signaling pathway map (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Non-structural protein 10 [SARS CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Non-structural protein 10 [SARS CoV-2] (edit)	Pathogenesis of SARS-CoV-2 mediated by nsp9-nsp10 complex (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	non-structural protein 15 [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	non-structural protein 15 [SARS-CoV-2] (edit)	Endoplasmic reticulum stress response in coronavirus infection (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Papain-like proteinase [SARS-CoV-2] (edit)	Antiviral and anti-inflammatory effects of Nrf2 on SARS-CoV-2 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Papain-like proteinase [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	non-structural protein 5 [SARS-CoV-2] (edit)	Antiviral and anti-inflammatory effects of Nrf2 on SARS-CoV-2 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	non-structural protein 5 [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	surface glycoprotein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF1a polyprotein;ORF1ab polyprotein (edit)	Antiviral and anti-inflammatory effects of Nrf2 on SARS-CoV-2 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF1a polyprotein;ORF1ab polyprotein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF3a protein-encoding gene (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	envelope protein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	membrane glycoprotein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF6 protein (edit)	SARS-CoV-2 B.1.1.7 variant antagonises innate immune activation (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF6 protein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF7a protein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF7b (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF8 protein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	nucleocapsid phosphoprotein (edit)	SARS-CoV-2 B.1.1.7 variant antagonises innate immune activation (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	nucleocapsid phosphoprotein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF10 protein (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	non-structural protein 6 [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Protein 7a [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF8 protein [SARS-CoV-2] (edit)	Antiviral and anti-inflammatory effects of Nrf2 on SARS-CoV-2 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF8 protein [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Non-structural protein 2 [SARS CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF6 protein [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF10 protein [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	ORF10 protein [SARS-CoV-2] (edit)	Hijack of Ubiquitination by SARS-CoV-2 (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Non-structural protein 9 [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Non-structural protein 9 [SARS-CoV-2] (edit)	Pathogenesis of SARS-CoV-2 mediated by nsp9-nsp10 complex (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	SARS-CoV-2 NSP9 complex (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	SARS-CoV-2 Spike - human ACE2 receptor complex (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	SARS-CoV-2 Spike - human ACE2-SLC6A19 complex (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	SARS-CoV-2 cleaved Spike protein complex (edit)	Linoleic acid metabolism affected by coronavirus infection (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	SARS-CoV-2 cleaved Spike protein complex (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	SARS-CoV-2 main protease complex (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	complexo 2'-O-metiltransferase NSP10-NSP16 de SARS-CoV-2 (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	SARS-CoV-2 NSP3-NSP4-NSP6 complex (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Host translation inhibitor nsp1 [SARS-CoV-2] (edit)	nsp1 from SARS-CoV-2 inhibits translation initiation in the host cell (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Host translation inhibitor nsp1 [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Non-structural protein 4 [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Non-structural protein 7 [SARS-CoV-2] (edit)	Antiviral and anti-inflammatory effects of Nrf2 on SARS-CoV-2 pathway (edit)
coronavírus da síndrome respiratória aguda grave 2 (edit)	Non-structural protein 7 [SARS-CoV-2] (edit)	SARS-CoV-2 and COVID-19 pathway (edit)

Code examples

curl

curl -s https://raw.githubusercontent.com/egonw/SARS-CoV-2-Queries/master/sparql/pathways.rq | sed 's+<lang/>+pt+' > pathways.rq

curl -H "Accept: text/tab-separated-values" -G https://query.wikidata.org/bigdata/namespace/wdq/sparql --data-urlencode query@pathways.rq

This SPARQL query is available under CCZero.

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