SARS-CoV-2-Queries

articleCountPerGene.rq

Code examples: curl

SPARQL

#defaultView:BarChart
SELECT ?gene ?geneLabel (COUNT(?work) AS ?count) WHERE {
  ?gene wdt:P703 wd:Q82069695 ; wdt:P31 wd:Q7187 .
  ?work wdt:P921 ?gene .
  SERVICE wikibase:label { bd:serviceParam wikibase:language "en,en". }
} GROUP BY ?gene ?geneLabel
  ORDER BY ASC(?geneLabel)

run or edit

Output

gene	count
ORF10 protein (edit)	2
ORF1a polyprotein;ORF1ab polyprotein (edit)	1
ORF3a protein-encoding gene (edit)	2
ORF3d (edit)	2
ORF6 protein (edit)	1
ORF7a protein (edit)	1
ORF7b (edit)	4
ORF8 protein (edit)	6
envelope protein (edit)	1
membrane glycoprotein (edit)	1
nucleocapsid phosphoprotein (edit)	2
surface glycoprotein (edit)	2

Code examples

curl

curl -s https://raw.githubusercontent.com/egonw/SARS-CoV-2-Queries/master/sparql/articleCountPerGene.rq | sed 's+<lang/>+en+' > articleCountPerGene.rq

curl -H "Accept: text/tab-separated-values" -G https://query.wikidata.org/bigdata/namespace/wdq/sparql --data-urlencode query@articleCountPerGene.rq

This SPARQL query is available under CCZero.

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