SARS-CoV-2-Queries

genomes.rq

Code examples: curl

SPARQL

SELECT ?genome WHERE {
  wd:Q82069695 wdt:P527/wdt:P6800 ?genome .
  SERVICE wikibase:label { bd:serviceParam wikibase:language "en,en". }
}

run or edit

Output

genome

https://gisaid.org/CoV2020

https://www.ncbi.nlm.nih.gov/assembly/GCF_009858895.2

https://www.ncbi.nlm.nih.gov/genome/86693

https://www.ncbi.nlm.nih.gov/nuccore/1798174254

Code examples

curl

curl -s https://raw.githubusercontent.com/egonw/SARS-CoV-2-Queries/master/sparql/genomes.rq | sed 's+<lang/>+en+' > genomes.rq

curl -H "Accept: text/tab-separated-values" -G https://query.wikidata.org/bigdata/namespace/wdq/sparql --data-urlencode query@genomes.rq

This SPARQL query is available under CCZero.

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