SARS-CoV-2-Queries

litHumanCoronavirusesGeneCounts.rq

Code examples: curl

SPARQL

SELECT ?virus ?virusLabel ?gene ?geneLabel ?count WITH {
  SELECT ?virus ?gene (COUNT(DISTINCT ?work) AS ?count) WHERE {
    VALUES ?virus {
      wd:Q82069695 # SARS-CoV-2
      wd:Q16983360 # HKU1
      wd:Q16991954 # OC43
      wd:Q8351095  # NL63 
      wd:Q16983356 # 229E 
      wd:Q4902157  # MERS-CoV
      wd:Q278567   # SARS-CoV
    }
    ?gene wdt:P703 ?virus ; wdt:P31 wd:Q7187 .
    ?work wdt:P921 ?gene .
  } GROUP BY ?virus ?gene
} AS %ARTICLES WHERE {
  INCLUDE %ARTICLES
  SERVICE wikibase:label { bd:serviceParam wikibase:language "en,en". }
}
ORDER BY DESC(?count)

run or edit

Output

virus	gene	count
human Coronavirus NL63 (edit)	membrane protein (edit)	7
SARS-CoV-2 (edit)	ORF8 protein (edit)	6
human Coronavirus NL63 (edit)	nucleocapsid protein (edit)	3
human Coronavirus NL63 (edit)	envelope protein (edit)	3
human Coronavirus NL63 (edit)	spike protein (edit)	3
SARS-CoV-2 (edit)	ORF7b (edit)	3
human Coronavirus NL63 (edit)	ORF1a polyprotein;ORF1ab polyprotein (edit)	2
human Coronavirus NL63 (edit)	protein 3 (edit)	2
Human coronavirus 229E (edit)	nucleocapsid protein (edit)	2
Human coronavirus 229E (edit)	surface glycoprotein (edit)	2
Human coronavirus OC43 (edit)	spike surface glycoprotein (edit)	2
SARS-CoV-2 (edit)	nucleocapsid phosphoprotein (edit)	2
SARS-CoV-2 (edit)	ORF3a protein-encoding gene (edit)	2
SARS-CoV-2 (edit)	surface glycoprotein (edit)	2
SARSr-CoV (edit)	matrix protein (edit)	1
Human coronavirus 229E (edit)	envelope protein (edit)	1
Human coronavirus 229E (edit)	membrane protein (edit)	1
Human coronavirus 229E (edit)	4b protein (edit)	1
Human coronavirus 229E (edit)	4a protein (edit)	1
Human coronavirus HKU1 (edit)	membrane glycoprotein (edit)	1
Human coronavirus HKU1 (edit)	hemagglutinin-esterase glycoprotein (edit)	1
Human coronavirus HKU1 (edit)	ORF1a polyprotein;ORF1ab polyprotein (edit)	1
Human coronavirus HKU1 (edit)	nucleocapsid phosphoprotein (edit)	1
Human coronavirus HKU1 (edit)	envelope protein (edit)	1
Human coronavirus HKU1 (edit)	spike glycoprotein (edit)	1
Human coronavirus OC43 (edit)	membrane protein (edit)	1
Human coronavirus OC43 (edit)	I protein;nucleocapsid protein (edit)	1
Human coronavirus OC43 (edit)	ns2 (edit)	1
SARS-CoV-2 (edit)	ORF7a protein (edit)	1
SARS-CoV-2 (edit)	membrane glycoprotein (edit)	1
SARS-CoV-2 (edit)	envelope protein (edit)	1
SARS-CoV-2 (edit)	ORF1a polyprotein;ORF1ab polyprotein (edit)	1

Code examples

curl

curl -s https://raw.githubusercontent.com/egonw/SARS-CoV-2-Queries/master/sparql/litHumanCoronavirusesGeneCounts.rq | sed 's+<lang/>+en+' > litHumanCoronavirusesGeneCounts.rq

curl -H "Accept: text/tab-separated-values" -G https://query.wikidata.org/bigdata/namespace/wdq/sparql --data-urlencode query@litHumanCoronavirusesGeneCounts.rq

This SPARQL query is available under CCZero.

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