SARS-CoV-2-Queries

litSARSCoV2Genes.rq

Code examples: curl

SPARQL

SELECT (MAX(?dates) as ?date) ?work ?workLabel ?doi WHERE {
  ?gene wdt:P703 wd:Q82069695 ; wdt:P31 wd:Q7187 .
  ?work wdt:P921 ?gene .
  OPTIONAL { ?work wdt:P577 ?dates . }
  OPTIONAL { ?work wdt:P356 ?doi . }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "en,en". }
} GROUP BY ?work ?workLabel ?doi ORDER BY DESC(?date)

run or edit

Output

date	work	doi
2021-01-01	SARS-CoV-2 Accessory Protein ORF7b Mediates Tumor Necrosis Factor-α-Induced Apoptosis in Cells (edit)	10.3389/FMICB.2021.654709
2020-08-18	Effects of a major deletion in the SARS-CoV-2 genome on the severity of infection and the inflammatory response: an observational cohort study (edit)	10.1016/S0140-6736(20)31757-8
2020-07-21	Discovery and Genomic Characterization of a 382-Nucleotide Deletion in ORF7b and ORF8 during the Early Evolution of SARS-CoV-2 (edit)	10.1128/MBIO.01610-20
2020-06-22	A neutralizing human antibody binds to the N-terminal domain of the Spike protein of SARS-CoV-2 (edit)	10.1126/SCIENCE.ABC6952
2020-06-16	SARS-CoV-2 genomic surveillance in Taiwan revealed novel ORF8-deletion mutant and clade possibly associated with infections in Middle East (edit)	10.1080/22221751.2020.1782271
2020-05-25	Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a (edit)	10.1101/2020.05.22.20108498
2020-05-18	Molecular conservation and Differential mutation on ORF3a gene in Indian SARS-CoV2 genomes (edit)	10.1101/2020.05.14.096107
2020-04-30	A SARS-CoV-2 protein interaction map reveals targets for drug repurposing (edit)	10.1038/S41586-020-2286-9
2020-04-20	Crystal structure of SARS-CoV-2 nucleocapsid protein RNA binding domain reveals potential unique drug targeting sites (edit)	10.1016/J.APSB.2020.04.009
2020-04-12	Positive selection of ORF3a and ORF8 genes drives the evolution of SARS-CoV-2 during the 2020 COVID-19 pandemic (edit)	10.1101/2020.04.10.035964
2020-03-11	From SARS and MERS CoVs to SARS‐CoV‐2: Moving toward more biased codon usage in viral structural and nonstructural genes (edit)	10.1002/JMV.25754
2020-03-10	Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species (edit)	10.1016/J.MEEGID.2020.104285
2020-02-18	Virus against virus: a potential treatment for 2019-nCov (SARS-CoV-2) and other RNA viruses (edit)	10.1038/S41422-020-0290-0
2007-07-20	Expression, post-translational modification and biochemical characterization of proteins encoded by subgenomic mRNA8 of the severe acute respiratory syndrome coronavirus (edit)	10.1111/J.1742-4658.2007.05947.X

Code examples

curl

curl -s https://raw.githubusercontent.com/egonw/SARS-CoV-2-Queries/master/sparql/litSARSCoV2Genes.rq | sed 's+<lang/>+en+' > litSARSCoV2Genes.rq

curl -H "Accept: text/tab-separated-values" -G https://query.wikidata.org/bigdata/namespace/wdq/sparql --data-urlencode query@litSARSCoV2Genes.rq

This SPARQL query is available under CCZero.

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