lipidmaps-wp-curation
WikiPathways WP430
- WikiPathways: WP430 (classic)
- Species: Homo sapiens
- Scholia: WP430
- WPRDF file: wp/Human/WP430.ttl
- GPMLRDF file: wp/gpml/Human/WP430.ttl
- SBML file: sbml/WP430.sbml (SVG) (conversion notes)
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests: all 5 tests OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 13 tests OK!
- HMDBMetabolitesTests: all 1 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests: all 8 tests OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests
- retiredIdentifiers: .. all OK!
- onlyLIPIDMAPS: .x we found 1 problem(s):
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 7 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests
- casWithoutMapping: .. all OK!
- chebiWithoutMapping: .. all OK!
- chebiWithoutMapping_Reactome: .. all OK!
- chemspiderCIDWithoutMapping: .. all OK!
- duplicateWikidataMappings: .. all OK!
- hmdbWithoutMapping: .x we found 1 problem(s):
- kNApSAcKWithoutMapping: .. all OK!
- keggWithoutMapping: .. all OK!
- lipidMapsWithoutMapping: .. all OK!
- pubchemCIDWithoutMapping: .. all OK!
- replaceWikipedia: .. all OK!
- retiredIdentifiers: .. all OK!
- wikDataTypo: .. all OK!
- wikidataIdentifiersWrong: .. all OK!
Summary
- Number of test classes: 21
- Number of tests: 110
- Number of assertions: 222
- Number of fails: 2
Fails
Only LIPID MAPS identifiers
Expected a LIPID MAPS identifier, but found other identifiers: 17
http://classic.wikipathways.org/instance/WP430_r122069 Cholesterol has 57-88-5 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Cholic Acid has 81-25-4 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Fatty acid has C00162 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 DAG has C00165 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Triglyceride has C00422 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Phospholipid has C00865 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Cholesterol ester has C02530 from KEGG Compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 IDL has CHEBI:132933 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Mevalonate has CHEBI:25350 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Statin has CHEBI:35664 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 VLDL has CHEBI:39027 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 LDL has CHEBI:47774 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 HDL has CHEBI:47775 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Lipoproteins has CHEBI:6495 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Squalene has HMDB0000256 from HMDB but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 HMG-CoA has HMDB0001375 from HMDB but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP430_r122069 Acyl-CoA has HMDB0003419 from HMDB but expected a LIPID MAPS identifier
More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS
WikidataTests.hmdbWithoutMapping
HMDB identifiers without Wikidata mappings: 1
https://identifiers.org/hmdb/HMDB0003419 (Acyl-CoA) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP430_r122069 ;