Package net.bioclipse.managers

Class NanoManager

java.lang.Object
net.bioclipse.managers.NanoManager
All Implemented Interfaces:
IBactingManager, net.bioclipse.managers.business.IBioclipseManager
public class NanoManager extends Object implements IBactingManager
Bioclipse manager that wraps the CDK-based nanojava library.

  • Constructor Details

    • NanoManager

      public NanoManager(String workspaceRoot)
      Creates a new NanoManager.
      Parameters:
      workspaceRoot - location of the workspace, e.g. "."

  • Method Details

    • newMaterial

      public IMaterial newMaterial() throws net.bioclipse.core.business.BioclipseException
      Throws:
      net.bioclipse.core.business.BioclipseException

    • newMaterial

      public IMaterial newMaterial(String type) throws net.bioclipse.core.business.BioclipseException
      Throws:
      net.bioclipse.core.business.BioclipseException

    • newMaterial

      public IMaterial newMaterial(String type, String label) throws net.bioclipse.core.business.BioclipseException
      Throws:
      net.bioclipse.core.business.BioclipseException

    • newMaterial

      public IMaterial newMaterial(io.github.egonw.nanojava.data.Material material) throws net.bioclipse.core.business.BioclipseException
      Throws:
      net.bioclipse.core.business.BioclipseException

    • listMaterialTypes

      public Set<String> listMaterialTypes() throws net.bioclipse.core.business.BioclipseException, UnsupportedEncodingException, org.eclipse.core.runtime.CoreException
      Throws:
      net.bioclipse.core.business.BioclipseException
      UnsupportedEncodingException
      org.eclipse.core.runtime.CoreException

    • generateInChI

      public String generateInChI(IMaterial material) throws net.bioclipse.core.business.BioclipseException
      Throws:
      net.bioclipse.core.business.BioclipseException

    • getManagerName

      public String getManagerName()
      Specified by:
      getManagerName in interface net.bioclipse.managers.business.IBioclipseManager

    • doi

      public List<String> doi()
      Description copied from interface: IBactingManager
      Lists the DOIs of the articles associated to this manager.
      Specified by:
      doi in interface IBactingManager
      Returns:
      a List of String with DOIs