CDK Workshop 2009 #2

The second CDK Workshop day started off with application presentations, which are well covered by Chris’ blog posts:

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CDK Workshop 2009 #1

Coverage on Planet CDK, Twitter #cdkws2009, Friend Feed’s CDK room, and on this Wiki page. Chris blogged too.

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My CDK Workshop 2009 Course Material

My CDK Workshop 2009 Course Material:

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Downloading Domoic Acid from PubChem

The identity of domoic acid has been under discussion (see here, here and here). (And I very much like the ChemSpider service to make it easy to copy data from ChemSpider into WikiPedia ChemBoxes; cheers!)

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CDK 1.2.1 Released

I just released CDK 1.2.1 (aka The CDK Workshop 2009 Release), which is now available for download from SourceForge. The source can be found in our Git repository. The changes since 1.2.0 are mostly bug fixing, new unit tests, and minor clean up here and there:

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Bioclipse2 Scripting #3: XLogP calculatation using a XMPP CDK cloud service

In preparation of the CDK workshop next week, here is a small Bioclipse2 script to calculate the XLogP value for a given SMILES, using the a CDK-based XMPP service:

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Multiple inheritence for content types?

Bioclipse is an environment for handling and processing life sciences data. This data is present in files with a wide variety of formats, each of which can contain a particular data type. For example, a we can have a single molecule in MDL molfile and in CML.

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