SARS-CoV-2-Queries

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Literatura

Estas consultas enumeran los últimos 10 artículos sobre una serie de temas. No reemplaza a Scholia [1], que tiene una visión mucho más rica de la literatura sobre el tema. Cada sección incluye un enlace a la página de Scholia para ese tema. Las consultas utilizadas aquí son muy básicas y solo utilizan la propiedad ‘sujeto principal’.

Literatura sobre SARS-CoV-2

SARS-CoV-2 es el nombre del virus.

SPARQL sparql/litSARSCoV2.rq (ejecutar, editar)

SELECT (MAX(?dates) as ?date) ?work ?workLabel ?doi WHERE {
  ?work wdt:P921 wd:Q82069695 .
  OPTIONAL { ?work wdt:P577 ?dates . }
  OPTIONAL { ?work wdt:P356 ?doi . }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "es,en". }
} GROUP BY ?work ?workLabel ?doi ORDER BY DESC(?date) ?work

Esto le da estos 10 documentos:

date work doi
2025-03-01 Severity of Pediatric Inflammatory Multisystem Syndrome Temporally Associated with SARS-CoV-2 Diminished During Successive Waves of the COVID-19 Pandemic: Data from a Nationwide German Survey (edit) 10.1016/J.JPEDS.2024.114419
2025-02-01 Neuroimaging markers of cognitive fatigue in individuals with post-acute sequelae of SARS-CoV-2 infection (edit) 10.1016/J.BANDC.2024.106254
2025-02-01 Insight into potential long COVID effects: Antidepressant use in post SARS-CoV-2 Infection scenarios. A multiregional nested case-control study (edit) 10.1016/J.PSYCHRES.2024.116290
2025-01-01 A comprehensive pan-cancer analysis of SARS-CoV-2-related cancer malignancy: COVID-19 infection shapes a dynamic immune microenvironment and affects the prognosis (edit) 10.1016/J.JINF.2024.106364
2025-01-01 The burden, clinical features and outcomes of SARS-CoV-2, Influenza and co-infections during concurrently out-of-season outbreaks in Brazil (edit) 10.1016/J.PUHE.2024.10.016
2025-01-01 Association of SARS-CoV-2 Infection during pregnancy with placental weight and histopathologic lesions (edit) 10.1016/J.PLACENTA.2024.12.017
2024-12-30 Placentas From SARS‐CoV‐2 Infection During Pregnancy Exhibit Foci of Oxidative Stress and DNA Damage (edit) 10.1111/AJI.70034
2024-12-28 New-onset cardiovascular diseases post SARS-CoV-2 infection in an urban population in the Bronx (edit) 10.1038/S41598-024-82983-7
This table is truncated. See the full table at sparql/litSARSCoV2.rq

Literatura sobre SARS-CoV-2 genes

También podemos consultar artículos sobre los genes:

SPARQL sparql/litSARSCoV2Genes.rq (ejecutar, editar)

SELECT (MAX(?dates) as ?date) ?work ?workLabel ?doi WHERE {
  ?gene wdt:P703 wd:Q82069695 ; wdt:P31 wd:Q7187 .
  ?work wdt:P921 ?gene .
  OPTIONAL { ?work wdt:P577 ?dates . }
  OPTIONAL { ?work wdt:P356 ?doi . }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "es,en". }
} GROUP BY ?work ?workLabel ?doi ORDER BY DESC(?date)

Que actualmente da:

date work doi
2022-05-17 Spectral and theoretical study of SARS-CoV-2 ORF10 protein interaction with endogenous and exogenous macroheterocyclic compounds (edit) 10.1016/J.SAA.2022.121403
2022-03-15 The importance of accessory protein variants in the pathogenicity of SARS-CoV-2 (edit) 10.1016/J.ABB.2022.109124
2021-12-02 Emergence of unique SARS-CoV-2 ORF10 variants and their impact on protein structure and function (edit) 10.1016/J.IJBIOMAC.2021.11.151
2021-06-01 Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution (edit) 10.1016/J.VIROL.2021.02.013
2021-01-05 Characterization of SARS-CoV-2 ORF6 deletion variants detected in a nosocomial cluster during routine genomic surveillance, Lyon, France (edit) 10.1080/22221751.2021.1872351
2021-01-01 SARS-CoV-2 Accessory Protein ORF7b Mediates Tumor Necrosis Factor-α-Induced Apoptosis in Cells (edit) 10.3389/FMICB.2021.654709
2020-10-01 Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic (edit) 10.7554/ELIFE.59633
2020-08-18 Effects of a major deletion in the SARS-CoV-2 genome on the severity of infection and the inflammatory response: an observational cohort study (edit) 10.1016/S0140-6736(20)31757-8
This table is truncated. See the full table at sparql/litSARSCoV2Genes.rq

Literatura sobre SARS-CoV-2 proteínas

Y sobre las proteínas del virus:

SPARQL sparql/litSARSCoV2Proteins.rq (ejecutar, editar)

SELECT (MAX(?dates) as ?date) ?work ?workLabel ?doi WHERE {
  ?protein wdt:P703 wd:Q82069695 ; wdt:P31 wd:Q8054 .
  ?work wdt:P921 ?protein .
  OPTIONAL { ?work wdt:P577 ?dates . }
  OPTIONAL { ?work wdt:P356 ?doi . }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "es,en". }
} GROUP BY ?work ?workLabel ?doi ORDER BY DESC(?date)

Que actualmente da:

date work doi
2024-07-16 Point mutations at specific sites of the nsp12-nsp8 interface dramatically affect the RNA polymerization activity of SARS-CoV-2 (edit) 10.1073/PNAS.2317977121
2024-04-01 Activity and inhibition of the SARS-CoV-2 Omicron nsp13 R392C variant using RNA duplex unwinding assays (edit) 10.1016/J.SLASD.2024.01.006
2024-03-13 NSP6 inhibits the production of ACE2-containing exosomes to promote SARS-CoV-2 infectivity (edit) 10.1128/MBIO.03358-23
2024-02-14 The E3 ligase TRIM22 restricts SARS-CoV-2 replication by promoting proteasomal degradation of NSP8 (edit) 10.1128/MBIO.02320-23
2024-02-09 SARS-CoV-2 Nsp1 cooperates with initiation factors EIF1 and 1A to selectively enhance translation of viral RNA (edit) 10.1371/JOURNAL.PPAT.1011535
2024-02-01 SARS-CoV-2 nsp3 C-terminal region: Conserved beyond coronavirus with potential role in DMV pore formation (edit) 10.1016/J.BPJ.2023.11.2065
2024-02-01 The role of ATP hydrolysis and product release in the translocation mechanism of SARS-CoV-2 nsp13 (edit) 10.1016/J.BPJ.2023.11.2069
2024-02-01 Interactions of SARS-CoV-2 nsp7 or nsp8 with nsp12 causes severe constriction of RNA entry channel: Implications for novel RdRp inhibitor drug discovery (edit) 10.1016/J.BPJ.2023.11.1441
This table is truncated. See the full table at sparql/litSARSCoV2Proteins.rq

Literatura sobre los coronavirus

Como se describe en el capítulo ??, el SARS-Cov-2 es uno de los coronavirus que puede infectar a los humanos.

SPARQL sparql/litCoronaviruses.rq (ejecutar, editar)

SELECT (MAX(?dates) as ?date) ?work ?workLabel ?doi WHERE {
  ?work wdt:P921 wd:Q57751738 .
  OPTIONAL { ?work wdt:P577 ?dates . }
  OPTIONAL { ?work wdt:P356 ?doi . }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "es,en". }
} GROUP BY ?work ?workLabel ?doi ORDER BY DESC(?date)

Esto le da estos 10 documentos:

date work doi
2024-08-28 Recent evolutionary origin and localized diversity hotspots of mammalian coronaviruses (edit) 10.7554/ELIFE.91745.3
2022-08-05 A history of coronaviruses (edit) 10.15347/WJM/2022.005
2021-04-26 Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and SARS‐CoV‐2 (edit) 10.1111/CLA.12454
2021-03-19 Major coronavirus variant found in pets for first time (edit) 10.1126/SCIENCE.ABI6152
2020-11-23 No Evidence of Coronaviruses or Other Potentially Zoonotic Viruses in Sunda pangolins (Manis javanica) Entering the Wildlife Trade via Malaysia (edit) 10.1007/S10393-020-01503-X
2020-09-08 Polyphenols vs. Coronaviruses: How Far Has Research Moved Forward? (edit) 10.3390/MOLECULES25184103
2020-09-01 A Guide to COVID-19: a global pandemic caused by the novel coronavirus SARS-CoV-2 (edit) 10.1111/FEBS.15375
2020-09-01 Wild birds as reservoirs for diverse and abundant gamma- and deltacoronaviruses (edit) 10.1093/FEMSRE/FUAA026
This table is truncated. See the full table at sparql/litCoronaviruses.rq

Literatura sobre los coronavirus humanos

Hay más de 6000 artículos sobre los siete coronavirus humanos en Wikidata. Por lo tanto, la siguiente consulta está un poco ajustada para el rendimiento y es más compleja. Además, la lista es bastante larga y no figura en esta página. Para ver el resultado, haga clic a continuación en el nombre del archivo litHumanCoronaviruses.rq:

SPARQL sparql/litHumanCoronaviruses.rq (ejecutar, editar)

SELECT ?date ?work ?workLabel ?virus ?virusLabel ?doi ?pubmed WITH {
  SELECT (MAX(?dates) as ?date) ?work ?doi ?virus WHERE {
    VALUES ?virus {
      wd:Q82069695 # SARS-CoV-2
      wd:Q16983360 # HKU1
      wd:Q16991954 # OC43
      wd:Q8351095  # NL63 
      wd:Q16983356 # 229E 
      wd:Q4902157  # MERS-CoV
      wd:Q278567   # SARS-CoV
    }
    ?work wdt:P577 ?dates ;
          wdt:P921 ?virus .
  } GROUP BY ?work ?doi ?virus
    ORDER BY DESC(?date)
    LIMIT 5000
} AS %ARTICLES WHERE {
  INCLUDE %ARTICLES
  OPTIONAL { ?work wdt:P356 ?doi . }
  OPTIONAL { ?work wdt:P698 ?pubmed . }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "es,en". }
}
ORDER BY DESC(?date) ?doi ?pubmed ?virus

Además, el número de artículos para cada virus varía significativamente, lo que se puede visualizar con esta consulta:

SPARQL sparql/litHumanCoronavirusesCounts.rq (ejecutar, editar)

SELECT ?virus ?virusLabel ?count WITH {
  SELECT ?virus (COUNT(DISTINCT ?work) AS ?count) WHERE {
    VALUES ?virus {
      wd:Q82069695 # SARS-CoV-2
      wd:Q16983360 # HKU1
      wd:Q16991954 # OC43
      wd:Q8351095  # NL63 
      wd:Q16983356 # 229E 
      wd:Q4902157  # MERS-CoV
      wd:Q278567   # SARS-CoV
    }
    ?work wdt:P921 ?virus .
  } GROUP BY ?virus
} AS %ARTICLES WHERE {
  INCLUDE %ARTICLES
  SERVICE wikibase:label { bd:serviceParam wikibase:language "es,en". }
}
ORDER BY DESC(?count)

Lo que nos dice:

virus count
SARS-CoV-2 (edit) 25971
SARS coronavirus (edit) 2492
MERS-CoV (edit) 1053
Human coronavirus OC43 (edit) 116
Human coronavirus 229E (edit) 110
Coronavirus Humana NL63 (edit) 94
Human coronavirus HKU1 (edit) 22

y sus genes

SPARQL sparql/litHumanCoronavirusesGeneCounts.rq (ejecutar, editar)

SELECT ?virus ?virusLabel ?gene ?geneLabel ?count WITH {
  SELECT ?virus ?gene (COUNT(DISTINCT ?work) AS ?count) WHERE {
    VALUES ?virus {
      wd:Q82069695 # SARS-CoV-2
      wd:Q16983360 # HKU1
      wd:Q16991954 # OC43
      wd:Q8351095  # NL63 
      wd:Q16983356 # 229E 
      wd:Q4902157  # MERS-CoV
      wd:Q278567   # SARS-CoV
    }
    ?gene wdt:P703 ?virus ; wdt:P31 wd:Q7187 .
    ?work wdt:P921 ?gene .
  } GROUP BY ?virus ?gene
} AS %ARTICLES WHERE {
  INCLUDE %ARTICLES
  SERVICE wikibase:label { bd:serviceParam wikibase:language "es,en". }
}
ORDER BY DESC(?count)

Lo que nos muestra:

virus gene count
Coronavirus Humana NL63 (edit) membrane protein (edit) 7
SARS-CoV-2 (edit) ORF8 protein (edit) 6
SARS-CoV-2 (edit) ORF7b (edit) 4
Coronavirus Humana NL63 (edit) nucleocapsid protein (edit) 3
Coronavirus Humana NL63 (edit) envelope protein (edit) 3
Coronavirus Humana NL63 (edit) Gen coronavirus humano NL63 (edit) 3
Coronavirus Humana NL63 (edit) ORF1a polyprotein;ORF1ab polyprotein (edit) 2
Coronavirus Humana NL63 (edit) protein 3 (edit) 2
Human coronavirus 229E (edit) nucleocapsid protein (edit) 2
Human coronavirus 229E (edit) surface glycoprotein (edit) 2
SARS-CoV-2 (edit) ORF3d (edit) 2
Human coronavirus OC43 (edit) spike surface glycoprotein (edit) 2
SARS-CoV-2 (edit) ORF10 protein (edit) 2
SARS-CoV-2 (edit) nucleocapsid phosphoprotein (edit) 2
SARS-CoV-2 (edit) ORF3a protein-encoding gene (edit) 2
SARS-CoV-2 (edit) surface glycoprotein (edit) 2
SARS coronavirus (edit) matrix protein (edit) 1
Human coronavirus 229E (edit) envelope protein (edit) 1
Human coronavirus 229E (edit) membrane protein (edit) 1
Human coronavirus 229E (edit) 4b protein (edit) 1
Human coronavirus 229E (edit) 4a protein (edit) 1
Human coronavirus HKU1 (edit) membrane glycoprotein (edit) 1
Human coronavirus HKU1 (edit) hemagglutinin-esterase glycoprotein (edit) 1
Human coronavirus HKU1 (edit) ORF1a polyprotein;ORF1ab polyprotein (edit) 1
Human coronavirus HKU1 (edit) nucleocapsid phosphoprotein (edit) 1
Human coronavirus HKU1 (edit) envelope protein (edit) 1
Human coronavirus HKU1 (edit) spike glycoprotein (edit) 1
Human coronavirus HKU1 (edit) non-structural protein (edit) 1
Human coronavirus OC43 (edit) membrane protein (edit) 1
Human coronavirus OC43 (edit) I protein;nucleocapsid protein (edit) 1
Human coronavirus OC43 (edit) ns2 (edit) 1
SARS-CoV-2 (edit) ORF7a protein (edit) 1
SARS-CoV-2 (edit) ORF6 protein (edit) 1
SARS-CoV-2 (edit) membrane glycoprotein (edit) 1
SARS-CoV-2 (edit) envelope protein (edit) 1
SARS-CoV-2 (edit) ORF1a polyprotein;ORF1ab polyprotein (edit) 1

y sus proteínas

SPARQL sparql/litHumanCoronavirusesProteinCounts.rq (ejecutar, editar)

SELECT ?virus ?virusLabel ?protein ?proteinLabel ?count WITH {
  SELECT ?virus ?protein (COUNT(DISTINCT ?work) AS ?count) WHERE {
    VALUES ?virus {
      wd:Q82069695 # SARS-CoV-2
      wd:Q16983360 # HKU1
      wd:Q16991954 # OC43
      wd:Q8351095  # NL63 
      wd:Q16983356 # 229E 
      wd:Q4902157  # MERS-CoV
      wd:Q278567   # SARS-CoV
    }
    ?protein wdt:P31 wd:Q8054 .
    { ?protein wdt:P703 ?virus }
    UNION
    { ?protein wdt:P702 | ^wdt:P688 ?gene . ?gene wdt:P703 ?virus }
    ?work wdt:P921 ?protein .
  } GROUP BY ?virus ?protein
} AS %ARTICLES WHERE {
  INCLUDE %ARTICLES
  SERVICE wikibase:label { bd:serviceParam wikibase:language "es,en". }
}
ORDER BY DESC(?count) ?virus ?protein

Donde están los recuentos:

virus protein count
SARS-CoV-2 (edit) spike glycoprotein [SARS-CoV-2] (edit) 416
SARS-CoV-2 (edit) nucleocapsid protein [SARS-CoV-2] (edit) 108
SARS coronavirus (edit) spike glycoprotein [SARS-Cov] (edit) 98
SARS-CoV-2 (edit) Papain-like proteinase [SARS-CoV-2] (edit) 76
SARS coronavirus (edit) nucleoprotein [SARS-Cov] (edit) 70
SARS coronavirus (edit) 3C-like proteinase [SARS-Cov] (edit) 66
SARS-CoV-2 (edit) RNA-directed RNA polymerase [SARS-CoV-2] (edit) 62
SARS-CoV-2 (edit) non-structural protein 5 [SARS-CoV-2] (edit) 60
SARS-CoV-2 (edit) Non-structural protein 10 [SARS CoV-2] (edit) 57
SARS-CoV-2 (edit) Host translation inhibitor nsp1 [SARS-CoV-2] (edit) 57
SARS-CoV-2 (edit) non-structural protein 16 [SARS-CoV-2] (edit) 47
SARS coronavirus (edit) papain-like proteinase [SARS-Cov] (edit) 46
SARS-CoV-2 (edit) Non-structural protein 14 [SARS-CoV-2] (edit) 45
SARS-CoV-2 (edit) Helicase [SARS-CoV-2] (edit) 44
SARS coronavirus (edit) Protein 3a [SARS-Cov] (edit) 41
SARS coronavirus (edit) Envelope small membrane protein [SARS-Cov] (edit) 38
SARS-CoV-2 (edit) envelope protein [SARS-CoV-2] (edit) 34
SARS-CoV-2 (edit) ORF8 protein [SARS-CoV-2] (edit) 31
SARS-CoV-2 (edit) Viroporin 3a (edit) 30
SARS-CoV-2 (edit) non-structural protein 15 [SARS-CoV-2] (edit) 29
SARS-CoV-2 (edit) Non-structural protein nsp8 [SARS-CoV-2] (edit) 29
SARS-CoV-2 (edit) Non-structural protein 7 [SARS-CoV-2] (edit) 28
SARS-CoV-2 (edit) membrane protein [SARS-CoV-2] (edit) 26
SARS coronavirus (edit) Membrane protein [SARS-Cov] (edit) 25
SARS-CoV-2 (edit) ORF6 protein [SARS-CoV-2] (edit) 22
SARS coronavirus (edit) Non-structural protein NS6 [SARS-Cov] (edit) 20
SARS-CoV-2 (edit) Protein 7a [SARS-CoV-2] (edit) 19
SARS coronavirus (edit) host translation inhibitor nsp1 [SARS-Cov] (edit) 17
SARS-CoV-2 (edit) Non-structural protein 9 [SARS-CoV-2] (edit) 17
SARS-CoV-2 (edit) Protein ORF9b [SARS-CoV-2] (edit) 16
SARS coronavirus (edit) Protein 7a [SARS-Cov] (edit) 15
SARS-CoV-2 (edit) non-structural protein 6 [SARS-CoV-2] (edit) 14
SARS-CoV-2 (edit) Non-structural protein 2 [SARS CoV-2] (edit) 14
SARS coronavirus (edit) Non-structural protein 3b [SARS-Cov] (edit) 10
SARS coronavirus (edit) 2'-O-methyltransferase [SARS-Cov] (edit) 10
SARS coronavirus (edit) Guanine-N7 methyltransferase [SARS-Cov] (edit) 10
SARS coronavirus (edit) protein non-structural 8a [SARS-Cov] (edit) 10
MERS-CoV (edit) spike glycoprotein (edit) 10
SARS-CoV-2 (edit) ORF10 protein [SARS-CoV-2] (edit) 10
SARS coronavirus (edit) helicase [SARS-Cov] (edit) 9
SARS-CoV-2 (edit) Non-structural protein 4 [SARS-CoV-2] (edit) 9
SARS coronavirus (edit) Protein 9b [SARS-Cov] (edit) 8
SARS coronavirus (edit) uridylate-specific endoribonuclease [SARS-Cov] (edit) 8
SARS coronavirus (edit) non-structural protein 10 [SARS-Cov] (edit) 8
SARS coronavirus (edit) protein non-structural 8b [SARS-Cov] (edit) 8
SARS-CoV-2 (edit) ORF3b protein [SARS-CoV-2] (edit) 8
SARS-CoV-2 (edit) Protein non-structural 7b [SARS-CoV-2] (edit) 8
SARS coronavirus (edit) replicase polyprotein 1ab [SARS-Cov] (edit) 7
SARS coronavirus (edit) RNA-directed RNA polymerase [SARS-Cov] (edit) 7
SARS coronavirus (edit) Protein non-structural 7b [SARS-Cov] (edit) 6
SARS coronavirus (edit) non-structural protein 7 [SARS-Cov] (edit) 6
SARS coronavirus (edit) non-structural protein 8 [SARS-Cov] (edit) 6
Human coronavirus OC43 (edit) nucleocapsid protein (edit) 5
SARS coronavirus (edit) non-structural protein 9 [SARS-Cov] (edit) 5
SARS coronavirus (edit) spike protein S2 [SARS-Cov] (edit) 5
SARS coronavirus (edit) non-structural protein 4 [SARS-Cov] (edit) 5
Coronavirus Humana NL63 (edit) Spike glycoprotein [NL63] (edit) 5
Human coronavirus OC43 (edit) ns12.9 (edit) 4
Human coronavirus OC43 (edit) spike surface glycoprotein (edit) 4
Human coronavirus HKU1 (edit) Spike glycoprotein (edit) 3
SARS coronavirus (edit) non-structural protein 6 [SARS-Cov] (edit) 3
SARS coronavirus (edit) non-structural protein 2 [SARS-Cov] (edit) 3
MERS-CoV (edit) nucleoprotein (edit) 3
SARS-CoV-2 (edit) ORF9c protein [SARS CoV-2] (edit) 3
SARS-CoV-2 (edit) orf1ab polyprotein [SARS-Cov 2] (edit) 3
Human coronavirus 229E (edit) Non-structural protein 4b (edit) 2
Human coronavirus 229E (edit) Spike glycoprotein (edit) 2
Human coronavirus HKU1 (edit) Replicase polyprotein 1ab (edit) 2
Human coronavirus OC43 (edit) hemagglutinin-esterase (edit) 2
SARS-CoV-2 (edit) putative protein ORF3c (edit) 2
SARS-CoV-2 (edit) Non-structural protein 11 [SARS CoV-2] (edit) 2
Coronavirus Humana NL63 (edit) Nucleoprotein (edit) 2
Human coronavirus 229E (edit) Non-structural protein 4a (edit) 1
Human coronavirus 229E (edit) Nucleoprotein (edit) 1
Human coronavirus 229E (edit) Replicase polyprotein 1ab (edit) 1
Human coronavirus HKU1 (edit) Spike glycoprotein (edit) 1
Human coronavirus HKU1 (edit) Membrane protein (edit) 1
Human coronavirus OC43 (edit) ns2 (edit) 1
Human coronavirus OC43 (edit) membrane protein (edit) 1
SARS coronavirus (edit) Replicase polyprotein 1a (edit) 1
MERS-CoV (edit) NS4B protein (edit) 1
Coronavirus Humana NL63 (edit) Membrane protein (edit) 1

Referencias

  1. Rasberry L, Willighagen E, Nielsen FÅ, Mietchen D. Robustifying Scholia: paving the way for knowledge discovery and research assessment through Wikidata. RIO Journal [Internet]. 2019 May 2;5. Available from: https://riojournal.com/article/35820/ doi:10.3897/RIO.5.E35820 (Scholia)